Cluster: HRGMv2_2182_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2182
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2182_1 | HRGMv2_2182_1_1001 | 1169787 | 1172354 | + | 3.A.5.1.3 |
| pfam | HRGMv2_2182_1 | HRGMv2_2182_1_1002 | 1172542 | 1173660 | + | RF-1 | PCRF |
| STP | HRGMv2_2182_1 | HRGMv2_2182_1_1003 | 1173698 | 1174165 | + | CheW |
| CAZyme | HRGMv2_2182_1 | HRGMv2_2182_1_1004 | 1174219 | 1175838 | + | GH77 |
Gene ID: HRGMv2_2182_1_1001
Type: TC
Location: 1169787 - 1172354 (+)
Type: TC
Location: 1169787 - 1172354 (+)
Gene ID: HRGMv2_2182_1_1002
Type: pfam
Location: 1172542 - 1173660 (+)
Type: pfam
Location: 1172542 - 1173660 (+)
Gene ID: HRGMv2_2182_1_1003
Type: STP
Location: 1173698 - 1174165 (+)
Type: STP
Location: 1173698 - 1174165 (+)
Gene ID: HRGMv2_2182_1_1004
Type: CAZyme
Location: 1174219 - 1175838 (+)
Type: CAZyme
Location: 1174219 - 1175838 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000436535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.