Cluster: HRGMv2_2182_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2182
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2182_1 | HRGMv2_2182_1_836 | 985830 | 988145 | + | 3.A.7.16.1 |
| TC | HRGMv2_2182_1 | HRGMv2_2182_1_837 | 988191 | 988985 | + | 3.A.11.1.4 |
| NULL(UNKNOWN) | HRGMv2_2182_1 | HRGMv2_2182_1_838 | 989136 | 989558 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_2182_1 | HRGMv2_2182_1_839 | 989965 | 990765 | + | Peptidase_M23 |
| CAZyme | HRGMv2_2182_1 | HRGMv2_2182_1_840 | 991032 | 992102 | - | GT28 |
Gene ID: HRGMv2_2182_1_836
Type: TC
Location: 985830 - 988145 (+)
Type: TC
Location: 985830 - 988145 (+)
Gene ID: HRGMv2_2182_1_837
Type: TC
Location: 988191 - 988985 (+)
Type: TC
Location: 988191 - 988985 (+)
Gene ID: HRGMv2_2182_1_838
Type:
Location: 989136 - 989558 (+)
Type:
Location: 989136 - 989558 (+)
Gene ID: HRGMv2_2182_1_839
Type: STP
Location: 989965 - 990765 (+)
Type: STP
Location: 989965 - 990765 (+)
Gene ID: HRGMv2_2182_1_840
Type: CAZyme
Location: 991032 - 992102 (-)
Type: CAZyme
Location: 991032 - 992102 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000436535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2182_1_838 | vegan > omnivore | 2.81088 | 0.00565 |
| HRGMv2_2182_1_838 | vegetarian > omnivore | 2.17684 | 0.02312 |