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Cluster: HRGMv2_2182_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2182_1 HRGMv2_2182_1_53 64198 65988 - 3.A.1.106.2
CAZyme HRGMv2_2182_1 HRGMv2_2182_1_54 66102 67658 - GH28
NULL(UNKNOWN) HRGMv2_2182_1 HRGMv2_2182_1_55 67649 68596 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2182_1 HRGMv2_2182_1_56 68699 70651 - CBM91 | GH43_12
TC HRGMv2_2182_1 HRGMv2_2182_1_57 70873 71736 - 3.A.1.1.29
TC HRGMv2_2182_1 HRGMv2_2182_1_58 71748 73244 - 3.A.1.1.29
STP HRGMv2_2182_1 HRGMv2_2182_1_59 73384 74949 - SBP_bac_1
pfam HRGMv2_2182_1 HRGMv2_2182_1_60 75374 76015 - UPF0029 | DUF1949
CAZyme HRGMv2_2182_1 HRGMv2_2182_1_61 76285 79002 + GT51
Gene ID: HRGMv2_2182_1_53
Type: TC
Location: 64198 - 65988 (-)
Gene ID: HRGMv2_2182_1_54
Type: CAZyme
Location: 66102 - 67658 (-)
Gene ID: HRGMv2_2182_1_55
Type:
Location: 67649 - 68596 (-)
Gene ID: HRGMv2_2182_1_56
Type: CAZyme
Location: 68699 - 70651 (-)
Gene ID: HRGMv2_2182_1_57
Type: TC
Location: 70873 - 71736 (-)
Gene ID: HRGMv2_2182_1_58
Type: TC
Location: 71748 - 73244 (-)
Gene ID: HRGMv2_2182_1_59
Type: STP
Location: 73384 - 74949 (-)
Gene ID: HRGMv2_2182_1_60
Type: pfam
Location: 75374 - 76015 (-)
Gene ID: HRGMv2_2182_1_61
Type: CAZyme
Location: 76285 - 79002 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2182_1_59 vegetarian > vegan 1.22330 0.00110

🧭 Explore Read Mapping of CGC

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