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Cluster: HRGMv2_2154_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2154_20 HRGMv2_2154_20_11 11811 14258 - GT2 | GT2
NULL(UNKNOWN) HRGMv2_2154_20 HRGMv2_2154_20_12 14263 15153 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2154_20 HRGMv2_2154_20_13 15153 16079 - RrnaAD | PCMT | MTS | NodS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
TC HRGMv2_2154_20 HRGMv2_2154_20_14 16093 17364 - 3.A.1.103.6
TC HRGMv2_2154_20 HRGMv2_2154_20_15 17377 18192 - 3.A.1.104.1
pfam HRGMv2_2154_20 HRGMv2_2154_20_16 18202 18756 - dTDP_sugar_isom
STP HRGMv2_2154_20 HRGMv2_2154_20_17 18771 19901 - Aminotran_1_2
CAZyme HRGMv2_2154_20 HRGMv2_2154_20_18 19914 21455 - GH25
Gene ID: HRGMv2_2154_20_11
Type: CAZyme
Location: 11811 - 14258 (-)
Gene ID: HRGMv2_2154_20_12
Type:
Location: 14263 - 15153 (-)
Gene ID: HRGMv2_2154_20_13
Type: pfam
Location: 15153 - 16079 (-)
Gene ID: HRGMv2_2154_20_14
Type: TC
Location: 16093 - 17364 (-)
Gene ID: HRGMv2_2154_20_15
Type: TC
Location: 17377 - 18192 (-)
Gene ID: HRGMv2_2154_20_16
Type: pfam
Location: 18202 - 18756 (-)
Gene ID: HRGMv2_2154_20_17
Type: STP
Location: 18771 - 19901 (-)
Gene ID: HRGMv2_2154_20_18
Type: CAZyme
Location: 19914 - 21455 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2154_20_15 vegan > omnivore 1.04075 0.03808

🧭 Explore Read Mapping of CGC

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