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Cluster: HRGMv2_2140_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2140_2 HRGMv2_2140_2_13 9914 12523 + 3.A.3.2.21
TC HRGMv2_2140_2 HRGMv2_2140_2_14 12558 13718 + 2.A.86.1.8
pfam HRGMv2_2140_2 HRGMv2_2140_2_15 13759 14535 + TatD_DNase
STP HRGMv2_2140_2 HRGMv2_2140_2_16 14654 15235 + TetR_N
CAZyme HRGMv2_2140_2 HRGMv2_2140_2_17 15282 16652 + GH13_20
CAZyme HRGMv2_2140_2 HRGMv2_2140_2_18 16701 18605 + CBM48 | GH13_9
pfam HRGMv2_2140_2 HRGMv2_2140_2_19 18620 19459 + CN_hydrolase
NULL(UNKNOWN) HRGMv2_2140_2 HRGMv2_2140_2_20 19553 19786 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2140_2 HRGMv2_2140_2_21 19879 21033 + 9.B.10.1.1
Gene ID: HRGMv2_2140_2_13
Type: TC
Location: 9914 - 12523 (+)
Gene ID: HRGMv2_2140_2_14
Type: TC
Location: 12558 - 13718 (+)
Gene ID: HRGMv2_2140_2_15
Type: pfam
Location: 13759 - 14535 (+)
Gene ID: HRGMv2_2140_2_16
Type: STP
Location: 14654 - 15235 (+)
Gene ID: HRGMv2_2140_2_17
Type: CAZyme
Location: 15282 - 16652 (+)
Gene ID: HRGMv2_2140_2_18
Type: CAZyme
Location: 16701 - 18605 (+)
Gene ID: HRGMv2_2140_2_19
Type: pfam
Location: 18620 - 19459 (+)
Gene ID: HRGMv2_2140_2_20
Type:
Location: 19553 - 19786 (+)
Gene ID: HRGMv2_2140_2_21
Type: TC
Location: 19879 - 21033 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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