dbCAN Logo

Cluster: HRGMv2_2140_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2140_33 HRGMv2_2140_33_8 11028 12398 + 2.A.66.1.32
CAZyme HRGMv2_2140_33 HRGMv2_2140_33_9 12445 13818 - GH32
CAZyme HRGMv2_2140_33 HRGMv2_2140_33_10 13828 14916 - GH179
pfam HRGMv2_2140_33 HRGMv2_2140_33_11 14937 15863 - AP_endonuc_2
TC HRGMv2_2140_33 HRGMv2_2140_33_12 15884 16777 - 3.A.1.1.41
TC HRGMv2_2140_33 HRGMv2_2140_33_13 16793 17683 - 3.A.1.1.7
TC HRGMv2_2140_33 HRGMv2_2140_33_14 17745 19055 - 3.A.1.1.7
pfam HRGMv2_2140_33 HRGMv2_2140_33_15 19106 19921 - AP_endonuc_2
TF HRGMv2_2140_33 HRGMv2_2140_33_16 20232 21098 + HTH_AraC | HTH_AraC
TC HRGMv2_2140_33 HRGMv2_2140_33_17 21155 21979 - 3.A.1.15.11
TC HRGMv2_2140_33 HRGMv2_2140_33_18 21976 22641 - 3.A.1.15.3
TC HRGMv2_2140_33 HRGMv2_2140_33_19 22664 23575 - 3.A.1.15.3
Gene ID: HRGMv2_2140_33_8
Type: TC
Location: 11028 - 12398 (+)
Gene ID: HRGMv2_2140_33_9
Type: CAZyme
Location: 12445 - 13818 (-)
Gene ID: HRGMv2_2140_33_10
Type: CAZyme
Location: 13828 - 14916 (-)
Gene ID: HRGMv2_2140_33_11
Type: pfam
Location: 14937 - 15863 (-)
Gene ID: HRGMv2_2140_33_12
Type: TC
Location: 15884 - 16777 (-)
Gene ID: HRGMv2_2140_33_13
Type: TC
Location: 16793 - 17683 (-)
Gene ID: HRGMv2_2140_33_14
Type: TC
Location: 17745 - 19055 (-)
Gene ID: HRGMv2_2140_33_15
Type: pfam
Location: 19106 - 19921 (-)
Gene ID: HRGMv2_2140_33_16
Type: TF
Location: 20232 - 21098 (+)
Gene ID: HRGMv2_2140_33_17
Type: TC
Location: 21155 - 21979 (-)
Gene ID: HRGMv2_2140_33_18
Type: TC
Location: 21976 - 22641 (-)
Gene ID: HRGMv2_2140_33_19
Type: TC
Location: 22664 - 23575 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List