Cluster: HRGMv2_2140_CGC28
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2140
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2140_13 | HRGMv2_2140_13_26 | 28405 | 30189 | - | 3.A.1.111.2 |
| pfam | HRGMv2_2140_13 | HRGMv2_2140_13_27 | 30186 | 33323 | - | Lant_dehydr_N | Lant_dehydr_C |
| TC | HRGMv2_2140_13 | HRGMv2_2140_13_28 | 33777 | 35762 | - | 3.A.10.1.5 |
| STP | HRGMv2_2140_13 | HRGMv2_2140_13_29 | 35904 | 36401 | - | ACT |
| pfam | HRGMv2_2140_13 | HRGMv2_2140_13_30 | 36415 | 38133 | - | TPP_enzyme_M | TPP_enzyme_C | TPP_enzyme_N |
| TC | HRGMv2_2140_13 | HRGMv2_2140_13_31 | 38554 | 41115 | - | 3.A.3.5.15 |
| pfam | HRGMv2_2140_13 | HRGMv2_2140_13_32 | 41146 | 41409 | - | Trns_repr_metal |
| TC | HRGMv2_2140_13 | HRGMv2_2140_13_33 | 41596 | 42630 | - | 3.A.1.2.14 |
| TC | HRGMv2_2140_13 | HRGMv2_2140_13_34 | 42630 | 43688 | - | 3.A.1.2.25 |
| TC | HRGMv2_2140_13 | HRGMv2_2140_13_35 | 43688 | 45199 | - | 3.A.1.2.25 |
| TC | HRGMv2_2140_13 | HRGMv2_2140_13_36 | 45319 | 46395 | - | 3.A.1.2.14 |
| TC | HRGMv2_2140_13 | HRGMv2_2140_13_37 | 46771 | 47847 | - | 3.A.1.2.14 |
| TC | HRGMv2_2140_13 | HRGMv2_2140_13_38 | 48038 | 49507 | - | 8.A.59.2.1 |
| TF | HRGMv2_2140_13 | HRGMv2_2140_13_39 | 49512 | 51131 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2140_13 | HRGMv2_2140_13_40 | 51519 | 56588 | - | GH146 |
| pfam | HRGMv2_2140_13 | HRGMv2_2140_13_41 | 56813 | 58807 | - | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | FIVAR | Cadherin-like | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 | DUF6805 |
| CAZyme | HRGMv2_2140_13 | HRGMv2_2140_13_42 | 58896 | 63872 | - | GH43_22 | GH43_34 |
Gene ID: HRGMv2_2140_13_26
Type: TC
Location: 28405 - 30189 (-)
Type: TC
Location: 28405 - 30189 (-)
Gene ID: HRGMv2_2140_13_27
Type: pfam
Location: 30186 - 33323 (-)
Type: pfam
Location: 30186 - 33323 (-)
Gene ID: HRGMv2_2140_13_28
Type: TC
Location: 33777 - 35762 (-)
Type: TC
Location: 33777 - 35762 (-)
Gene ID: HRGMv2_2140_13_29
Type: STP
Location: 35904 - 36401 (-)
Type: STP
Location: 35904 - 36401 (-)
Gene ID: HRGMv2_2140_13_30
Type: pfam
Location: 36415 - 38133 (-)
Type: pfam
Location: 36415 - 38133 (-)
Gene ID: HRGMv2_2140_13_31
Type: TC
Location: 38554 - 41115 (-)
Type: TC
Location: 38554 - 41115 (-)
Gene ID: HRGMv2_2140_13_32
Type: pfam
Location: 41146 - 41409 (-)
Type: pfam
Location: 41146 - 41409 (-)
Gene ID: HRGMv2_2140_13_33
Type: TC
Location: 41596 - 42630 (-)
Type: TC
Location: 41596 - 42630 (-)
Gene ID: HRGMv2_2140_13_34
Type: TC
Location: 42630 - 43688 (-)
Type: TC
Location: 42630 - 43688 (-)
Gene ID: HRGMv2_2140_13_35
Type: TC
Location: 43688 - 45199 (-)
Type: TC
Location: 43688 - 45199 (-)
Gene ID: HRGMv2_2140_13_36
Type: TC
Location: 45319 - 46395 (-)
Type: TC
Location: 45319 - 46395 (-)
Gene ID: HRGMv2_2140_13_37
Type: TC
Location: 46771 - 47847 (-)
Type: TC
Location: 46771 - 47847 (-)
Gene ID: HRGMv2_2140_13_38
Type: TC
Location: 48038 - 49507 (-)
Type: TC
Location: 48038 - 49507 (-)
Gene ID: HRGMv2_2140_13_39
Type: TF
Location: 49512 - 51131 (-)
Type: TF
Location: 49512 - 51131 (-)
Gene ID: HRGMv2_2140_13_40
Type: CAZyme
Location: 51519 - 56588 (-)
Type: CAZyme
Location: 51519 - 56588 (-)
Gene ID: HRGMv2_2140_13_41
Type: pfam
Location: 56813 - 58807 (-)
Type: pfam
Location: 56813 - 58807 (-)
Gene ID: HRGMv2_2140_13_42
Type: CAZyme
Location: 58896 - 63872 (-)
Type: CAZyme
Location: 58896 - 63872 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lactonifactor
Species
Lactonifactor sp009677585
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.