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Cluster: HRGMv2_2140_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2140_11 HRGMv2_2140_11_18 15563 16573 + GH179
TC HRGMv2_2140_11 HRGMv2_2140_11_19 16596 17573 + 3.A.1.2.13
TC HRGMv2_2140_11 HRGMv2_2140_11_20 17637 18776 + 3.A.1.2.6
TC HRGMv2_2140_11 HRGMv2_2140_11_21 18885 21455 + 3.A.1.2.1
peptidase HRGMv2_2140_11 HRGMv2_2140_11_22 21459 22643 + M20.UPW
STP HRGMv2_2140_11 HRGMv2_2140_11_23 22686 23813 + PALP
TC HRGMv2_2140_11 HRGMv2_2140_11_24 23844 24614 + 1.A.13.5.1
Gene ID: HRGMv2_2140_11_18
Type: CAZyme
Location: 15563 - 16573 (+)
Gene ID: HRGMv2_2140_11_19
Type: TC
Location: 16596 - 17573 (+)
Gene ID: HRGMv2_2140_11_20
Type: TC
Location: 17637 - 18776 (+)
Gene ID: HRGMv2_2140_11_21
Type: TC
Location: 18885 - 21455 (+)
Gene ID: HRGMv2_2140_11_22
Type: peptidase
Location: 21459 - 22643 (+)
Gene ID: HRGMv2_2140_11_23
Type: STP
Location: 22686 - 23813 (+)
Gene ID: HRGMv2_2140_11_24
Type: TC
Location: 23844 - 24614 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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