Cluster: HRGMv2_2140_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2140
- CGC Family ID: CGCFAM_00763
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2140_7 | HRGMv2_2140_7_43 | 42876 | 44078 | + | CBM50 | CBM50 | GH25 |
| pfam | HRGMv2_2140_7 | HRGMv2_2140_7_44 | 44125 | 44745 | - | UDG |
| TC | HRGMv2_2140_7 | HRGMv2_2140_7_45 | 44897 | 46732 | - | 3.A.1.135.6 |
| TC | HRGMv2_2140_7 | HRGMv2_2140_7_46 | 46725 | 48890 | - | 3.A.1.135.6 |
| TF | HRGMv2_2140_7 | HRGMv2_2140_7_47 | 48895 | 49377 | - | MarR |
| TC | HRGMv2_2140_7 | HRGMv2_2140_7_48 | 49551 | 50930 | - | 2.A.66.1.32 |
Gene ID: HRGMv2_2140_7_43
Type: CAZyme
Location: 42876 - 44078 (+)
Type: CAZyme
Location: 42876 - 44078 (+)
Gene ID: HRGMv2_2140_7_44
Type: pfam
Location: 44125 - 44745 (-)
Type: pfam
Location: 44125 - 44745 (-)
Gene ID: HRGMv2_2140_7_45
Type: TC
Location: 44897 - 46732 (-)
Type: TC
Location: 44897 - 46732 (-)
Gene ID: HRGMv2_2140_7_46
Type: TC
Location: 46725 - 48890 (-)
Type: TC
Location: 46725 - 48890 (-)
Gene ID: HRGMv2_2140_7_47
Type: TF
Location: 48895 - 49377 (-)
Type: TF
Location: 48895 - 49377 (-)
Gene ID: HRGMv2_2140_7_48
Type: TC
Location: 49551 - 50930 (-)
Type: TC
Location: 49551 - 50930 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lactonifactor
Species
Lactonifactor sp009677585
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.