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Cluster: HRGMv2_2140_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2140_2 HRGMv2_2140_2_243 279701 280639 - 2.A.28.2.4
CAZyme HRGMv2_2140_2 HRGMv2_2140_2_244 281188 288165 + CBM66 | GH43_22 | GH43_26 | GH43_31
TF HRGMv2_2140_2 HRGMv2_2140_2_245 288232 289095 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2140_2 HRGMv2_2140_2_246 289223 290902 + GH13_31
TC HRGMv2_2140_2 HRGMv2_2140_2_247 291099 292430 + 3.A.1.1.45
TC HRGMv2_2140_2 HRGMv2_2140_2_248 292487 293329 + 3.A.1.1.45
TC HRGMv2_2140_2 HRGMv2_2140_2_249 293329 294168 + 3.A.1.1.45
CAZyme HRGMv2_2140_2 HRGMv2_2140_2_250 294180 295667 + GH77
TF HRGMv2_2140_2 HRGMv2_2140_2_251 295696 296727 + LacI
TF HRGMv2_2140_2 HRGMv2_2140_2_252 296776 297651 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2140_2 HRGMv2_2140_2_253 297809 300067 + GT35
TF HRGMv2_2140_2 HRGMv2_2140_2_254 300215 300910 + Trans_reg_C
STP HRGMv2_2140_2 HRGMv2_2140_2_255 300898 302121 + HATPase_c | HisKA
TC HRGMv2_2140_2 HRGMv2_2140_2_256 302207 303085 + 3.A.1.148.4
Gene ID: HRGMv2_2140_2_243
Type: TC
Location: 279701 - 280639 (-)
Gene ID: HRGMv2_2140_2_244
Type: CAZyme
Location: 281188 - 288165 (+)
Gene ID: HRGMv2_2140_2_245
Type: TF
Location: 288232 - 289095 (-)
Gene ID: HRGMv2_2140_2_246
Type: CAZyme
Location: 289223 - 290902 (+)
Gene ID: HRGMv2_2140_2_247
Type: TC
Location: 291099 - 292430 (+)
Gene ID: HRGMv2_2140_2_248
Type: TC
Location: 292487 - 293329 (+)
Gene ID: HRGMv2_2140_2_249
Type: TC
Location: 293329 - 294168 (+)
Gene ID: HRGMv2_2140_2_250
Type: CAZyme
Location: 294180 - 295667 (+)
Gene ID: HRGMv2_2140_2_251
Type: TF
Location: 295696 - 296727 (+)
Gene ID: HRGMv2_2140_2_252
Type: TF
Location: 296776 - 297651 (-)
Gene ID: HRGMv2_2140_2_253
Type: CAZyme
Location: 297809 - 300067 (+)
Gene ID: HRGMv2_2140_2_254
Type: TF
Location: 300215 - 300910 (+)
Gene ID: HRGMv2_2140_2_255
Type: STP
Location: 300898 - 302121 (+)
Gene ID: HRGMv2_2140_2_256
Type: TC
Location: 302207 - 303085 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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