Cluster: HRGMv2_2140_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2140
- CGC Family ID: CGCFAM_02490
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2140_2 | HRGMv2_2140_2_208 | 244624 | 247089 | + | GH116 |
| STP | HRGMv2_2140_2 | HRGMv2_2140_2_209 | 247103 | 248422 | + | SBP_bac_1 |
| TC | HRGMv2_2140_2 | HRGMv2_2140_2_210 | 248488 | 249369 | + | 3.A.1.1.41 |
| TC | HRGMv2_2140_2 | HRGMv2_2140_2_211 | 249366 | 250208 | + | 3.A.1.1.18 |
Gene ID: HRGMv2_2140_2_208
Type: CAZyme
Location: 244624 - 247089 (+)
Type: CAZyme
Location: 244624 - 247089 (+)
Gene ID: HRGMv2_2140_2_209
Type: STP
Location: 247103 - 248422 (+)
Type: STP
Location: 247103 - 248422 (+)
Gene ID: HRGMv2_2140_2_210
Type: TC
Location: 248488 - 249369 (+)
Type: TC
Location: 248488 - 249369 (+)
Gene ID: HRGMv2_2140_2_211
Type: TC
Location: 249366 - 250208 (+)
Type: TC
Location: 249366 - 250208 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lactonifactor
Species
Lactonifactor sp009677585
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2140_2_209 | vegetarian > vegan | 1.04260 | 0.04425 |