Cluster: HRGMv2_2122_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2122
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2122_5 | HRGMv2_2122_5_70 | 70657 | 72096 | + | GT5 |
| pfam | HRGMv2_2122_5 | HRGMv2_2122_5_71 | 72086 | 73003 | - | DUF5688 |
| TC | HRGMv2_2122_5 | HRGMv2_2122_5_72 | 73165 | 74214 | - | 3.A.1.11.7 |
| TC | HRGMv2_2122_5 | HRGMv2_2122_5_73 | 74218 | 74997 | - | 3.A.1.11.8 |
| TC | HRGMv2_2122_5 | HRGMv2_2122_5_74 | 74991 | 75812 | - | 3.A.1.11.1 |
| TC | HRGMv2_2122_5 | HRGMv2_2122_5_75 | 75805 | 76878 | - | 3.A.1.11.8 |
Gene ID: HRGMv2_2122_5_70
Type: CAZyme
Location: 70657 - 72096 (+)
Type: CAZyme
Location: 70657 - 72096 (+)
Gene ID: HRGMv2_2122_5_71
Type: pfam
Location: 72086 - 73003 (-)
Type: pfam
Location: 72086 - 73003 (-)
Gene ID: HRGMv2_2122_5_72
Type: TC
Location: 73165 - 74214 (-)
Type: TC
Location: 73165 - 74214 (-)
Gene ID: HRGMv2_2122_5_73
Type: TC
Location: 74218 - 74997 (-)
Type: TC
Location: 74218 - 74997 (-)
Gene ID: HRGMv2_2122_5_74
Type: TC
Location: 74991 - 75812 (-)
Type: TC
Location: 74991 - 75812 (-)
Gene ID: HRGMv2_2122_5_75
Type: TC
Location: 75805 - 76878 (-)
Type: TC
Location: 75805 - 76878 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_C
Species
Roseburia_C amylophila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.