Cluster: HRGMv2_2122_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2122
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2122_4 | HRGMv2_2122_4_1 | 91 | 933 | + | 3.A.1.1.45 |
| TC | HRGMv2_2122_4 | HRGMv2_2122_4_2 | 933 | 1817 | + | 3.A.1.1.45 |
| TF | HRGMv2_2122_4 | HRGMv2_2122_4_3 | 1872 | 2882 | + | LacI |
| CAZyme | HRGMv2_2122_4 | HRGMv2_2122_4_4 | 2908 | 4425 | + | GH77 |
Gene ID: HRGMv2_2122_4_1
Type: TC
Location: 91 - 933 (+)
Type: TC
Location: 91 - 933 (+)
Gene ID: HRGMv2_2122_4_2
Type: TC
Location: 933 - 1817 (+)
Type: TC
Location: 933 - 1817 (+)
Gene ID: HRGMv2_2122_4_3
Type: TF
Location: 1872 - 2882 (+)
Type: TF
Location: 1872 - 2882 (+)
Gene ID: HRGMv2_2122_4_4
Type: CAZyme
Location: 2908 - 4425 (+)
Type: CAZyme
Location: 2908 - 4425 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_C
Species
Roseburia_C amylophila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.