Cluster: HRGMv2_2122_CGC4
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2122
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2122_2 | HRGMv2_2122_2_38 | 35932 | 37044 | + | 3.A.1.1.26 |
| TF | HRGMv2_2122_2 | HRGMv2_2122_2_39 | 37156 | 38226 | + | HTH_8 |
| CAZyme | HRGMv2_2122_2 | HRGMv2_2122_2_40 | 38534 | 43108 | + | CBM82 | CBM83 | GH13_41 |
Gene ID: HRGMv2_2122_2_38
Type: TC
Location: 35932 - 37044 (+)
Type: TC
Location: 35932 - 37044 (+)
Gene ID: HRGMv2_2122_2_39
Type: TF
Location: 37156 - 38226 (+)
Type: TF
Location: 37156 - 38226 (+)
Gene ID: HRGMv2_2122_2_40
Type: CAZyme
Location: 38534 - 43108 (+)
Type: CAZyme
Location: 38534 - 43108 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_C
Species
Roseburia_C amylophila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.