Cluster: HRGMv2_2122_CGC30
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2122
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2122_31 | HRGMv2_2122_31_6 | 4683 | 5783 | + | 9.B.104.1.3 |
| pfam | HRGMv2_2122_31 | HRGMv2_2122_31_7 | 5863 | 6855 | + | SCP2 |
| pfam | HRGMv2_2122_31 | HRGMv2_2122_31_8 | 6871 | 7290 | + | HIT | CwfJ_C_1 | DcpS_C |
| CAZyme | HRGMv2_2122_31 | HRGMv2_2122_31_9 | 7355 | 8437 | - | GT28 |
Gene ID: HRGMv2_2122_31_6
Type: TC
Location: 4683 - 5783 (+)
Type: TC
Location: 4683 - 5783 (+)
Gene ID: HRGMv2_2122_31_7
Type: pfam
Location: 5863 - 6855 (+)
Type: pfam
Location: 5863 - 6855 (+)
Gene ID: HRGMv2_2122_31_8
Type: pfam
Location: 6871 - 7290 (+)
Type: pfam
Location: 6871 - 7290 (+)
Gene ID: HRGMv2_2122_31_9
Type: CAZyme
Location: 7355 - 8437 (-)
Type: CAZyme
Location: 7355 - 8437 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_C
Species
Roseburia_C amylophila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.