Cluster: HRGMv2_2122_CGC28
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2122
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2122_21 | HRGMv2_2122_21_31 | 32041 | 33807 | - | CBM34 | GH13_20 |
| TC | HRGMv2_2122_21 | HRGMv2_2122_21_32 | 33815 | 34660 | - | 3.A.1.1.6 |
| TC | HRGMv2_2122_21 | HRGMv2_2122_21_33 | 34653 | 35546 | - | 3.A.1.1.22 |
| TC | HRGMv2_2122_21 | HRGMv2_2122_21_34 | 35601 | 36863 | - | 3.A.1.1.16 |
Gene ID: HRGMv2_2122_21_31
Type: CAZyme
Location: 32041 - 33807 (-)
Type: CAZyme
Location: 32041 - 33807 (-)
Gene ID: HRGMv2_2122_21_32
Type: TC
Location: 33815 - 34660 (-)
Type: TC
Location: 33815 - 34660 (-)
Gene ID: HRGMv2_2122_21_33
Type: TC
Location: 34653 - 35546 (-)
Type: TC
Location: 34653 - 35546 (-)
Gene ID: HRGMv2_2122_21_34
Type: TC
Location: 35601 - 36863 (-)
Type: TC
Location: 35601 - 36863 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_C
Species
Roseburia_C amylophila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2122_21_31 | vegetarian > omnivore | 1.10041 | 0.02650 |
| HRGMv2_2122_21_31 | vegetarian > vegan | 1.56135 | 0.03201 |
| HRGMv2_2122_21_32 | vegetarian > omnivore | 1.36385 | 0.02650 |
| HRGMv2_2122_21_32 | vegetarian > vegan | 1.70920 | 0.03201 |
| HRGMv2_2122_21_33 | vegetarian > omnivore | 1.26062 | 0.02650 |
| HRGMv2_2122_21_33 | vegetarian > vegan | 1.29974 | 0.03201 |
| HRGMv2_2122_21_34 | vegetarian > omnivore | 1.48079 | 0.02650 |
| HRGMv2_2122_21_34 | vegetarian > vegan | 1.55784 | 0.03201 |