Cluster: HRGMv2_2122_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2122
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2122_15 | HRGMv2_2122_15_6 | 5578 | 7881 | - | GH31_1 |
| TC | HRGMv2_2122_15 | HRGMv2_2122_15_7 | 7902 | 8753 | - | 2.A.7.2.1 |
| pfam | HRGMv2_2122_15 | HRGMv2_2122_15_8 | 8983 | 9900 | - | SUFBD_core |
| TC | HRGMv2_2122_15 | HRGMv2_2122_15_9 | 9915 | 10640 | - | 3.A.1.114.1 |
| pfam | HRGMv2_2122_15 | HRGMv2_2122_15_10 | 10903 | 13167 | + | Sulfatase |
| TC | HRGMv2_2122_15 | HRGMv2_2122_15_11 | 13241 | 14407 | - | 2.A.4.7.4 |
Gene ID: HRGMv2_2122_15_6
Type: CAZyme
Location: 5578 - 7881 (-)
Type: CAZyme
Location: 5578 - 7881 (-)
Gene ID: HRGMv2_2122_15_7
Type: TC
Location: 7902 - 8753 (-)
Type: TC
Location: 7902 - 8753 (-)
Gene ID: HRGMv2_2122_15_8
Type: pfam
Location: 8983 - 9900 (-)
Type: pfam
Location: 8983 - 9900 (-)
Gene ID: HRGMv2_2122_15_9
Type: TC
Location: 9915 - 10640 (-)
Type: TC
Location: 9915 - 10640 (-)
Gene ID: HRGMv2_2122_15_10
Type: pfam
Location: 10903 - 13167 (+)
Type: pfam
Location: 10903 - 13167 (+)
Gene ID: HRGMv2_2122_15_11
Type: TC
Location: 13241 - 14407 (-)
Type: TC
Location: 13241 - 14407 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_C
Species
Roseburia_C amylophila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.