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Cluster: HRGMv2_2122_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2122_9 HRGMv2_2122_9_5 4305 5705 + 4.A.1.2.3
pfam HRGMv2_2122_9 HRGMv2_2122_9_6 5705 6556 + Lactamase_B
CAZyme HRGMv2_2122_9 HRGMv2_2122_9_7 6568 8025 + GH1
pfam HRGMv2_2122_9 HRGMv2_2122_9_8 8234 8713 + LuxS
pfam HRGMv2_2122_9 HRGMv2_2122_9_9 8804 9502 + PNP_UDP_1
CAZyme HRGMv2_2122_9 HRGMv2_2122_9_10 9689 10366 - GH23
TC HRGMv2_2122_9 HRGMv2_2122_9_11 10546 11262 + 2.A.78.1.1
TC HRGMv2_2122_9 HRGMv2_2122_9_12 11252 11587 + 2.A.78.1.1
Gene ID: HRGMv2_2122_9_5
Type: TC
Location: 4305 - 5705 (+)
Gene ID: HRGMv2_2122_9_6
Type: pfam
Location: 5705 - 6556 (+)
Gene ID: HRGMv2_2122_9_7
Type: CAZyme
Location: 6568 - 8025 (+)
Gene ID: HRGMv2_2122_9_8
Type: pfam
Location: 8234 - 8713 (+)
Gene ID: HRGMv2_2122_9_9
Type: pfam
Location: 8804 - 9502 (+)
Gene ID: HRGMv2_2122_9_10
Type: CAZyme
Location: 9689 - 10366 (-)
Gene ID: HRGMv2_2122_9_11
Type: TC
Location: 10546 - 11262 (+)
Gene ID: HRGMv2_2122_9_12
Type: TC
Location: 11252 - 11587 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2122_9_8 vegetarian > vegan 1.77775 0.03201

🧭 Explore Read Mapping of CGC

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