Cluster: HRGMv2_2121_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: beta-mannan
- Genome ID: HRGMv2_2121
- CGC Family ID: CGCFAM_01490
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2121_3 | HRGMv2_2121_3_152 | 176682 | 178028 | + | 2.A.66.1.33 |
| CAZyme | HRGMv2_2121_3 | HRGMv2_2121_3_153 | 178125 | 182774 | - | CBM23 | CBM27 | GH26 |
| NULL(UNKNOWN) | HRGMv2_2121_3 | HRGMv2_2121_3_154 | 183591 | 183746 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2121_3 | HRGMv2_2121_3_155 | 183893 | 184723 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2121_3 | HRGMv2_2121_3_156 | 184720 | 185373 | - | 3.A.1.124.4 |
Gene ID: HRGMv2_2121_3_152
Type: TC
Location: 176682 - 178028 (+)
Type: TC
Location: 176682 - 178028 (+)
Gene ID: HRGMv2_2121_3_153
Type: CAZyme
Location: 178125 - 182774 (-)
Type: CAZyme
Location: 178125 - 182774 (-)
Gene ID: HRGMv2_2121_3_154
Type:
Location: 183591 - 183746 (-)
Type:
Location: 183591 - 183746 (-)
Gene ID: HRGMv2_2121_3_155
Type:
Location: 183893 - 184723 (-)
Type:
Location: 183893 - 184723 (-)
Gene ID: HRGMv2_2121_3_156
Type: TC
Location: 184720 - 185373 (-)
Type: TC
Location: 184720 - 185373 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp029338615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.