Cluster: HRGMv2_2121_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2121
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2121_3 | HRGMv2_2121_3_93 | 104976 | 105521 | + | 3.A.1.25.5 |
| CAZyme | HRGMv2_2121_3 | HRGMv2_2121_3_94 | 105999 | 107564 | - | CBM50 |
| pfam | HRGMv2_2121_3 | HRGMv2_2121_3_95 | 107587 | 108036 | - | PrcB_C |
| pfam | HRGMv2_2121_3 | HRGMv2_2121_3_96 | 108153 | 109979 | - | tRNA-synt_2 | tRNA_anti-codon | GAD |
| TC | HRGMv2_2121_3 | HRGMv2_2121_3_97 | 110034 | 110648 | - | 8.A.59.4.1 |
Gene ID: HRGMv2_2121_3_93
Type: TC
Location: 104976 - 105521 (+)
Type: TC
Location: 104976 - 105521 (+)
Gene ID: HRGMv2_2121_3_94
Type: CAZyme
Location: 105999 - 107564 (-)
Type: CAZyme
Location: 105999 - 107564 (-)
Gene ID: HRGMv2_2121_3_95
Type: pfam
Location: 107587 - 108036 (-)
Type: pfam
Location: 107587 - 108036 (-)
Gene ID: HRGMv2_2121_3_96
Type: pfam
Location: 108153 - 109979 (-)
Type: pfam
Location: 108153 - 109979 (-)
Gene ID: HRGMv2_2121_3_97
Type: TC
Location: 110034 - 110648 (-)
Type: TC
Location: 110034 - 110648 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp029338615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.