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Cluster: HRGMv2_2121_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2121_24 HRGMv2_2121_24_6 7378 9699 - GH36
CAZyme HRGMv2_2121_24 HRGMv2_2121_24_7 9998 11695 - GH13_31
TC HRGMv2_2121_24 HRGMv2_2121_24_8 11705 12541 - 3.A.1.1.45
TC HRGMv2_2121_24 HRGMv2_2121_24_9 12541 13437 - 3.A.1.1.45
TC HRGMv2_2121_24 HRGMv2_2121_24_10 13467 14945 - 3.A.1.1.45
TF HRGMv2_2121_24 HRGMv2_2121_24_11 15280 16275 - LacI
STP HRGMv2_2121_24 HRGMv2_2121_24_12 16367 17917 - AAA
TC HRGMv2_2121_24 HRGMv2_2121_24_13 17973 19388 - 2.A.66.1.32
Gene ID: HRGMv2_2121_24_6
Type: CAZyme
Location: 7378 - 9699 (-)
Gene ID: HRGMv2_2121_24_7
Type: CAZyme
Location: 9998 - 11695 (-)
Gene ID: HRGMv2_2121_24_8
Type: TC
Location: 11705 - 12541 (-)
Gene ID: HRGMv2_2121_24_9
Type: TC
Location: 12541 - 13437 (-)
Gene ID: HRGMv2_2121_24_10
Type: TC
Location: 13467 - 14945 (-)
Gene ID: HRGMv2_2121_24_11
Type: TF
Location: 15280 - 16275 (-)
Gene ID: HRGMv2_2121_24_12
Type: STP
Location: 16367 - 17917 (-)
Gene ID: HRGMv2_2121_24_13
Type: TC
Location: 17973 - 19388 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2121_24_8 vegetarian > vegan 1.16829 0.00863

🧭 Explore Read Mapping of CGC

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