Cluster: HRGMv2_2121_CGC37
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2121
- CGC Family ID: CGCFAM_01229
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2121_23 | HRGMv2_2121_23_11 | 13141 | 13914 | - | 3.A.1.134.12 |
| NULL(UNKNOWN) | HRGMv2_2121_23 | HRGMv2_2121_23_12 | 14091 | 14336 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2121_23 | HRGMv2_2121_23_13 | 14412 | 16211 | + | GH13_20 |
| STP | HRGMv2_2121_23 | HRGMv2_2121_23_14 | 16456 | 17037 | - | Pribosyltran |
| pfam | HRGMv2_2121_23 | HRGMv2_2121_23_15 | 17210 | 19759 | - | FtsX | FtsX | MacB_PCD |
| TC | HRGMv2_2121_23 | HRGMv2_2121_23_16 | 19776 | 20477 | - | 3.A.1.122.7 |
Gene ID: HRGMv2_2121_23_11
Type: TC
Location: 13141 - 13914 (-)
Type: TC
Location: 13141 - 13914 (-)
Gene ID: HRGMv2_2121_23_12
Type:
Location: 14091 - 14336 (-)
Type:
Location: 14091 - 14336 (-)
Gene ID: HRGMv2_2121_23_13
Type: CAZyme
Location: 14412 - 16211 (+)
Type: CAZyme
Location: 14412 - 16211 (+)
Gene ID: HRGMv2_2121_23_14
Type: STP
Location: 16456 - 17037 (-)
Type: STP
Location: 16456 - 17037 (-)
Gene ID: HRGMv2_2121_23_15
Type: pfam
Location: 17210 - 19759 (-)
Type: pfam
Location: 17210 - 19759 (-)
Gene ID: HRGMv2_2121_23_16
Type: TC
Location: 19776 - 20477 (-)
Type: TC
Location: 19776 - 20477 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp029338615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.