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Cluster: HRGMv2_2121_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2121_23 HRGMv2_2121_23_1 51 1529 - GH32
TC HRGMv2_2121_23 HRGMv2_2121_23_2 1551 2570 - 3.A.1.2.15
TC HRGMv2_2121_23 HRGMv2_2121_23_3 2572 4071 - 3.A.1.2.20
Gene ID: HRGMv2_2121_23_1
Type: CAZyme
Location: 51 - 1529 (-)
Gene ID: HRGMv2_2121_23_2
Type: TC
Location: 1551 - 2570 (-)
Gene ID: HRGMv2_2121_23_3
Type: TC
Location: 2572 - 4071 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2121_23_2 vegan > omnivore 1.31314 0.02244
HRGMv2_2121_23_2 vegetarian > omnivore 1.58131 0.00565
HRGMv2_2121_23_3 vegetarian > omnivore 1.12852 0.00565

🧭 Explore Read Mapping of CGC

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