dbCAN HGM

Cluster: HRGMv2_2121_CGC33

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	HRGMv2_2121_16	HRGMv2_2121_16_40	44952	48737	+	GH77 \| GT35
TF	HRGMv2_2121_16	HRGMv2_2121_16_41	48924	50441	+	HTH_AraC
TC	HRGMv2_2121_16	HRGMv2_2121_16_42	50500	52212	+	8.A.59.2.1
STP	HRGMv2_2121_16	HRGMv2_2121_16_43	52835	54136	+	SBP_bac_1
TC	HRGMv2_2121_16	HRGMv2_2121_16_44	54243	55637	+	3.A.1.1.27
TC	HRGMv2_2121_16	HRGMv2_2121_16_45	55637	56512	+	3.A.1.1.27
TC	HRGMv2_2121_16	HRGMv2_2121_16_46	56563	58260	+	3.A.1.1.9
pfam	HRGMv2_2121_16	HRGMv2_2121_16_47	58514	59212	+	Hydrolase \| Hydrolase_like \| HAD_2
TC	HRGMv2_2121_16	HRGMv2_2121_16_48	59264	60592	-	2.A.66.1.37
TF	HRGMv2_2121_16	HRGMv2_2121_16_49	60583	61047	-	0040517
pfam	HRGMv2_2121_16	HRGMv2_2121_16_50	61407	62207	+	adh_short \| KR \| adh_short_C2 \| SDR
TC	HRGMv2_2121_16	HRGMv2_2121_16_51	63151	65547	+	3.A.3.23.2

Gene ID: HRGMv2_2121_16_40
Type: CAZyme
Location: 44952 - 48737 (+)

Gene ID: HRGMv2_2121_16_41
Type: TF
Location: 48924 - 50441 (+)

Gene ID: HRGMv2_2121_16_42
Type: TC
Location: 50500 - 52212 (+)

Gene ID: HRGMv2_2121_16_43
Type: STP
Location: 52835 - 54136 (+)

Gene ID: HRGMv2_2121_16_44
Type: TC
Location: 54243 - 55637 (+)

Gene ID: HRGMv2_2121_16_45
Type: TC
Location: 55637 - 56512 (+)

Gene ID: HRGMv2_2121_16_46
Type: TC
Location: 56563 - 58260 (+)

Gene ID: HRGMv2_2121_16_47
Type: pfam
Location: 58514 - 59212 (+)

Gene ID: HRGMv2_2121_16_48
Type: TC
Location: 59264 - 60592 (-)

Gene ID: HRGMv2_2121_16_49
Type: TF
Location: 60583 - 61047 (-)

Gene ID: HRGMv2_2121_16_50
Type: pfam
Location: 61407 - 62207 (+)

Gene ID: HRGMv2_2121_16_51
Type: TC
Location: 63151 - 65547 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2121_16_48	vegetarian > vegan	1.72656	0.00863

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2121_16_41	vegan > omnivore	2.43255	0.00027
HRGMv2_2121_16_42	vegan > omnivore	1.24256	0.00027
HRGMv2_2121_16_45	vegan > omnivore	2.13906	0.00027
HRGMv2_2121_16_46	flexitarian > omnivore	3.26579	0.03197
HRGMv2_2121_16_46	vegan > omnivore	2.81785	0.00027
HRGMv2_2121_16_47	vegan > omnivore	3.84581	0.00027
HRGMv2_2121_16_48	vegan > flexitarian	1.26351	0.01920
HRGMv2_2121_16_48	vegan > omnivore	3.84839	0.00027
HRGMv2_2121_16_49	vegan > flexitarian	1.40252	0.01678
HRGMv2_2121_16_49	vegan > omnivore	2.71762	0.00027
HRGMv2_2121_16_51	vegan > omnivore	3.27580	0.00027