Cluster: HRGMv2_2121_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2121
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2121_2 | HRGMv2_2121_2_25 | 25525 | 26550 | - | GH130_2 |
| CAZyme | HRGMv2_2121_2 | HRGMv2_2121_2_26 | 26652 | 27830 | - | GH130_1 |
| pfam | HRGMv2_2121_2 | HRGMv2_2121_2_27 | 27909 | 29078 | - | GlcNAc_2-epim | Beta-AFase-like_GH127_cat |
| TC | HRGMv2_2121_2 | HRGMv2_2121_2_28 | 29109 | 29993 | - | 3.A.1.1.47 |
| TC | HRGMv2_2121_2 | HRGMv2_2121_2_29 | 29995 | 31020 | - | 3.A.1.1.34 |
Gene ID: HRGMv2_2121_2_25
Type: CAZyme
Location: 25525 - 26550 (-)
Type: CAZyme
Location: 25525 - 26550 (-)
Gene ID: HRGMv2_2121_2_26
Type: CAZyme
Location: 26652 - 27830 (-)
Type: CAZyme
Location: 26652 - 27830 (-)
Gene ID: HRGMv2_2121_2_27
Type: pfam
Location: 27909 - 29078 (-)
Type: pfam
Location: 27909 - 29078 (-)
Gene ID: HRGMv2_2121_2_28
Type: TC
Location: 29109 - 29993 (-)
Type: TC
Location: 29109 - 29993 (-)
Gene ID: HRGMv2_2121_2_29
Type: TC
Location: 29995 - 31020 (-)
Type: TC
Location: 29995 - 31020 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp029338615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2121_2_25 | vegetarian > vegan | 1.21312 | 0.00863 |