Cluster: HRGMv2_2121_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2121
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2121_11 | HRGMv2_2121_11_43 | 41956 | 44073 | - | 9.B.74.1.1 |
| NULL(UNKNOWN) | HRGMv2_2121_11 | HRGMv2_2121_11_44 | 44042 | 44707 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2121_11 | HRGMv2_2121_11_45 | 44720 | 46858 | - | 9.B.74.1.1 |
| pfam | HRGMv2_2121_11 | HRGMv2_2121_11_46 | 46923 | 48287 | - | Aldedh |
| CAZyme | HRGMv2_2121_11 | HRGMv2_2121_11_47 | 48735 | 50327 | - | GH13_44 |
| TC | HRGMv2_2121_11 | HRGMv2_2121_11_48 | 50753 | 52255 | + | 2.A.22.5.3 |
Gene ID: HRGMv2_2121_11_43
Type: TC
Location: 41956 - 44073 (-)
Type: TC
Location: 41956 - 44073 (-)
Gene ID: HRGMv2_2121_11_44
Type:
Location: 44042 - 44707 (-)
Type:
Location: 44042 - 44707 (-)
Gene ID: HRGMv2_2121_11_45
Type: TC
Location: 44720 - 46858 (-)
Type: TC
Location: 44720 - 46858 (-)
Gene ID: HRGMv2_2121_11_46
Type: pfam
Location: 46923 - 48287 (-)
Type: pfam
Location: 46923 - 48287 (-)
Gene ID: HRGMv2_2121_11_47
Type: CAZyme
Location: 48735 - 50327 (-)
Type: CAZyme
Location: 48735 - 50327 (-)
Gene ID: HRGMv2_2121_11_48
Type: TC
Location: 50753 - 52255 (+)
Type: TC
Location: 50753 - 52255 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp029338615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.