Cluster: HRGMv2_2121_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2121
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2121_10 | HRGMv2_2121_10_59 | 61697 | 63133 | + | 3.A.1.1.27 |
| TC | HRGMv2_2121_10 | HRGMv2_2121_10_60 | 63133 | 63975 | + | 3.A.1.1.27 |
| NULL(UNKNOWN) | HRGMv2_2121_10 | HRGMv2_2121_10_61 | 64506 | 66347 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2121_10 | HRGMv2_2121_10_62 | 66320 | 66532 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2121_10 | HRGMv2_2121_10_63 | 66696 | 67823 | + | GH53 |
Gene ID: HRGMv2_2121_10_59
Type: TC
Location: 61697 - 63133 (+)
Type: TC
Location: 61697 - 63133 (+)
Gene ID: HRGMv2_2121_10_60
Type: TC
Location: 63133 - 63975 (+)
Type: TC
Location: 63133 - 63975 (+)
Gene ID: HRGMv2_2121_10_61
Type:
Location: 64506 - 66347 (+)
Type:
Location: 64506 - 66347 (+)
Gene ID: HRGMv2_2121_10_62
Type:
Location: 66320 - 66532 (+)
Type:
Location: 66320 - 66532 (+)
Gene ID: HRGMv2_2121_10_63
Type: CAZyme
Location: 66696 - 67823 (+)
Type: CAZyme
Location: 66696 - 67823 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp029338615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.