Cluster: HRGMv2_2121_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2121
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2121_1 | HRGMv2_2121_1_169 | 160864 | 161283 | - | 1.A.22.1.8 |
| pfam | HRGMv2_2121_1 | HRGMv2_2121_1_170 | 161363 | 162907 | - | Phosphodiest | Metalloenzyme | iPGM_N |
| pfam | HRGMv2_2121_1 | HRGMv2_2121_1_171 | 163190 | 163948 | - | Exo_endo_phos |
| CAZyme | HRGMv2_2121_1 | HRGMv2_2121_1_172 | 164297 | 167914 | - | CBM4 | CBM4 | CBM4 | GH16_3 |
Gene ID: HRGMv2_2121_1_169
Type: TC
Location: 160864 - 161283 (-)
Type: TC
Location: 160864 - 161283 (-)
Gene ID: HRGMv2_2121_1_170
Type: pfam
Location: 161363 - 162907 (-)
Type: pfam
Location: 161363 - 162907 (-)
Gene ID: HRGMv2_2121_1_171
Type: pfam
Location: 163190 - 163948 (-)
Type: pfam
Location: 163190 - 163948 (-)
Gene ID: HRGMv2_2121_1_172
Type: CAZyme
Location: 164297 - 167914 (-)
Type: CAZyme
Location: 164297 - 167914 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp029338615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2121_1_171 | vegan > omnivore | 2.14556 | 0.01478 |