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Cluster: HRGMv2_2121_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2121_9 HRGMv2_2121_9_41 41291 42676 + GT2
NULL(UNKNOWN) HRGMv2_2121_9 HRGMv2_2121_9_42 42660 43730 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2121_9 HRGMv2_2121_9_43 43727 44185 + PTPS
TC HRGMv2_2121_9 HRGMv2_2121_9_44 44244 45737 + 9.B.34.1.2
STP HRGMv2_2121_9 HRGMv2_2121_9_45 45753 47024 + SBP_bac_1
STP HRGMv2_2121_9 HRGMv2_2121_9_46 47132 47761 + TetR_N
TC HRGMv2_2121_9 HRGMv2_2121_9_47 48007 48708 + 3.A.1.134.11
pfam HRGMv2_2121_9 HRGMv2_2121_9_48 48710 51433 + FtsX | FtsX
TC HRGMv2_2121_9 HRGMv2_2121_9_49 51667 53094 + 2.A.25.1.9
Gene ID: HRGMv2_2121_9_41
Type: CAZyme
Location: 41291 - 42676 (+)
Gene ID: HRGMv2_2121_9_42
Type:
Location: 42660 - 43730 (+)
Gene ID: HRGMv2_2121_9_43
Type: pfam
Location: 43727 - 44185 (+)
Gene ID: HRGMv2_2121_9_44
Type: TC
Location: 44244 - 45737 (+)
Gene ID: HRGMv2_2121_9_45
Type: STP
Location: 45753 - 47024 (+)
Gene ID: HRGMv2_2121_9_46
Type: STP
Location: 47132 - 47761 (+)
Gene ID: HRGMv2_2121_9_47
Type: TC
Location: 48007 - 48708 (+)
Gene ID: HRGMv2_2121_9_48
Type: pfam
Location: 48710 - 51433 (+)
Gene ID: HRGMv2_2121_9_49
Type: TC
Location: 51667 - 53094 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2121_9_48 vegetarian > vegan 1.19848 0.00863

🧭 Explore Read Mapping of CGC

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