Cluster: HRGMv2_2121_CGC16
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2121
- CGC Family ID: CGCFAM_03427
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2121_7 | HRGMv2_2121_7_86 | 94666 | 96225 | + | 4.C.1.1.4 |
| STP | HRGMv2_2121_7 | HRGMv2_2121_7_87 | 96320 | 96898 | + | TetR_N |
| CAZyme | HRGMv2_2121_7 | HRGMv2_2121_7_88 | 97639 | 99108 | - | GH51_1 |
Gene ID: HRGMv2_2121_7_86
Type: TC
Location: 94666 - 96225 (+)
Type: TC
Location: 94666 - 96225 (+)
Gene ID: HRGMv2_2121_7_87
Type: STP
Location: 96320 - 96898 (+)
Type: STP
Location: 96320 - 96898 (+)
Gene ID: HRGMv2_2121_7_88
Type: CAZyme
Location: 97639 - 99108 (-)
Type: CAZyme
Location: 97639 - 99108 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp029338615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2121_7_88 | vegetarian > omnivore | 1.33080 | 0.00565 |