Cluster: HRGMv2_2121_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2121
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2121_6 | HRGMv2_2121_6_98 | 127216 | 129984 | + | GH3 |
| TC | HRGMv2_2121_6 | HRGMv2_2121_6_99 | 130316 | 131245 | + | 2.A.4.7.9 |
| TF | HRGMv2_2121_6 | HRGMv2_2121_6_100 | 131667 | 132416 | + | HTH_DeoR |
| STP | HRGMv2_2121_6 | HRGMv2_2121_6_101 | 132416 | 133318 | + | PfkB |
| TC | HRGMv2_2121_6 | HRGMv2_2121_6_102 | 133422 | 135488 | + | 4.A.2.1.20 |
| STP | HRGMv2_2121_6 | HRGMv2_2121_6_103 | 135756 | 136019 | + | PTS-HPr |
| TC | HRGMv2_2121_6 | HRGMv2_2121_6_104 | 136156 | 137859 | + | 8.A.7.1.1 |
Gene ID: HRGMv2_2121_6_98
Type: CAZyme
Location: 127216 - 129984 (+)
Type: CAZyme
Location: 127216 - 129984 (+)
Gene ID: HRGMv2_2121_6_99
Type: TC
Location: 130316 - 131245 (+)
Type: TC
Location: 130316 - 131245 (+)
Gene ID: HRGMv2_2121_6_100
Type: TF
Location: 131667 - 132416 (+)
Type: TF
Location: 131667 - 132416 (+)
Gene ID: HRGMv2_2121_6_101
Type: STP
Location: 132416 - 133318 (+)
Type: STP
Location: 132416 - 133318 (+)
Gene ID: HRGMv2_2121_6_102
Type: TC
Location: 133422 - 135488 (+)
Type: TC
Location: 133422 - 135488 (+)
Gene ID: HRGMv2_2121_6_103
Type: STP
Location: 135756 - 136019 (+)
Type: STP
Location: 135756 - 136019 (+)
Gene ID: HRGMv2_2121_6_104
Type: TC
Location: 136156 - 137859 (+)
Type: TC
Location: 136156 - 137859 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp029338615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.