Cluster: HRGMv2_2121_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2121
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2121_5 | HRGMv2_2121_5_40 | 44876 | 45823 | + | 3.A.1.105.7 |
| pfam | HRGMv2_2121_5 | HRGMv2_2121_5_41 | 45908 | 47071 | + | ABC2_membrane_3 |
| pfam | HRGMv2_2121_5 | HRGMv2_2121_5_42 | 47058 | 48218 | + | ABC2_membrane | ABC2_membrane_3 |
| CAZyme | HRGMv2_2121_5 | HRGMv2_2121_5_43 | 48392 | 50185 | + | GH13_36 |
Gene ID: HRGMv2_2121_5_40
Type: TC
Location: 44876 - 45823 (+)
Type: TC
Location: 44876 - 45823 (+)
Gene ID: HRGMv2_2121_5_41
Type: pfam
Location: 45908 - 47071 (+)
Type: pfam
Location: 45908 - 47071 (+)
Gene ID: HRGMv2_2121_5_42
Type: pfam
Location: 47058 - 48218 (+)
Type: pfam
Location: 47058 - 48218 (+)
Gene ID: HRGMv2_2121_5_43
Type: CAZyme
Location: 48392 - 50185 (+)
Type: CAZyme
Location: 48392 - 50185 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp029338615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.