Cluster: HRGMv2_2121_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2121
- CGC Family ID: CGCFAM_01232
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2121_4 | HRGMv2_2121_4_61 | 77821 | 79668 | + | CBM48 | GH13 |
| TC | HRGMv2_2121_4 | HRGMv2_2121_4_62 | 79722 | 80633 | + | 1.A.23.2.1 |
| TC | HRGMv2_2121_4 | HRGMv2_2121_4_63 | 80781 | 81902 | + | 9.B.10.1.1 |
| pfam | HRGMv2_2121_4 | HRGMv2_2121_4_64 | 81930 | 82892 | + | cobW | DUF1980_C |
| NULL(UNKNOWN) | HRGMv2_2121_4 | HRGMv2_2121_4_65 | 83052 | 85358 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2121_4 | HRGMv2_2121_4_66 | 85358 | 86308 | + | 3.A.1.105.9 |
Gene ID: HRGMv2_2121_4_61
Type: CAZyme
Location: 77821 - 79668 (+)
Type: CAZyme
Location: 77821 - 79668 (+)
Gene ID: HRGMv2_2121_4_62
Type: TC
Location: 79722 - 80633 (+)
Type: TC
Location: 79722 - 80633 (+)
Gene ID: HRGMv2_2121_4_63
Type: TC
Location: 80781 - 81902 (+)
Type: TC
Location: 80781 - 81902 (+)
Gene ID: HRGMv2_2121_4_64
Type: pfam
Location: 81930 - 82892 (+)
Type: pfam
Location: 81930 - 82892 (+)
Gene ID: HRGMv2_2121_4_65
Type:
Location: 83052 - 85358 (+)
Type:
Location: 83052 - 85358 (+)
Gene ID: HRGMv2_2121_4_66
Type: TC
Location: 85358 - 86308 (+)
Type: TC
Location: 85358 - 86308 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp029338615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.