Cluster: HRGMv2_2117_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2117
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2117_8 | HRGMv2_2117_8_7 | 22615 | 23577 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_2117_8 | HRGMv2_2117_8_8 | 23625 | 24647 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2117_8 | HRGMv2_2117_8_9 | 24939 | 27515 | - | 3.A.9.1.2 |
| NULL(UNKNOWN) | HRGMv2_2117_8 | HRGMv2_2117_8_10 | 27644 | 29167 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2117_8 | HRGMv2_2117_8_11 | 29375 | 30823 | - | GH1 |
Gene ID: HRGMv2_2117_8_7
Type: CAZyme
Location: 22615 - 23577 (-)
Type: CAZyme
Location: 22615 - 23577 (-)
Gene ID: HRGMv2_2117_8_8
Type:
Location: 23625 - 24647 (-)
Type:
Location: 23625 - 24647 (-)
Gene ID: HRGMv2_2117_8_9
Type: TC
Location: 24939 - 27515 (-)
Type: TC
Location: 24939 - 27515 (-)
Gene ID: HRGMv2_2117_8_10
Type:
Location: 27644 - 29167 (-)
Type:
Location: 27644 - 29167 (-)
Gene ID: HRGMv2_2117_8_11
Type: CAZyme
Location: 29375 - 30823 (-)
Type: CAZyme
Location: 29375 - 30823 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp900557435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2117_8_10 | vegetarian > vegan | 1.31254 | 0.00855 |