Cluster: HRGMv2_2107_CGC9
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2107
- CGC Family ID: CGCFAM_00414
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_1338 | 1529571 | 1531271 | - | 3.A.1.1.9 |
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_1339 | 1531322 | 1532197 | - | 3.A.1.1.27 |
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_1340 | 1532197 | 1533582 | - | 3.A.1.1.27 |
| STP | HRGMv2_2107_1 | HRGMv2_2107_1_1341 | 1533695 | 1535002 | - | SBP_bac_1 |
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_1342 | 1535139 | 1536881 | - | 9.B.33.1.1 |
| TF | HRGMv2_2107_1 | HRGMv2_2107_1_1343 | 1536874 | 1538391 | - | HTH_AraC |
| CAZyme | HRGMv2_2107_1 | HRGMv2_2107_1_1344 | 1538443 | 1542210 | - | GH77 | GT35 |
| TF | HRGMv2_2107_1 | HRGMv2_2107_1_1345 | 1542430 | 1543311 | + | HTH_AraC | HTH_AraC |
| NULL(UNKNOWN) | HRGMv2_2107_1 | HRGMv2_2107_1_1346 | 1543325 | 1544164 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_1347 | 1544154 | 1544801 | - | 3.A.1.124.4 |
Gene ID: HRGMv2_2107_1_1338
Type: TC
Location: 1529571 - 1531271 (-)
Type: TC
Location: 1529571 - 1531271 (-)
Gene ID: HRGMv2_2107_1_1339
Type: TC
Location: 1531322 - 1532197 (-)
Type: TC
Location: 1531322 - 1532197 (-)
Gene ID: HRGMv2_2107_1_1340
Type: TC
Location: 1532197 - 1533582 (-)
Type: TC
Location: 1532197 - 1533582 (-)
Gene ID: HRGMv2_2107_1_1341
Type: STP
Location: 1533695 - 1535002 (-)
Type: STP
Location: 1533695 - 1535002 (-)
Gene ID: HRGMv2_2107_1_1342
Type: TC
Location: 1535139 - 1536881 (-)
Type: TC
Location: 1535139 - 1536881 (-)
Gene ID: HRGMv2_2107_1_1343
Type: TF
Location: 1536874 - 1538391 (-)
Type: TF
Location: 1536874 - 1538391 (-)
Gene ID: HRGMv2_2107_1_1344
Type: CAZyme
Location: 1538443 - 1542210 (-)
Type: CAZyme
Location: 1538443 - 1542210 (-)
Gene ID: HRGMv2_2107_1_1345
Type: TF
Location: 1542430 - 1543311 (+)
Type: TF
Location: 1542430 - 1543311 (+)
Gene ID: HRGMv2_2107_1_1346
Type:
Location: 1543325 - 1544164 (-)
Type:
Location: 1543325 - 1544164 (-)
Gene ID: HRGMv2_2107_1_1347
Type: TC
Location: 1544154 - 1544801 (-)
Type: TC
Location: 1544154 - 1544801 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus ammoniilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2107_1_1342 | vegan > omnivore | 1.20728 | 0.01722 |
| HRGMv2_2107_1_1343 | vegan > omnivore | 1.54053 | 0.01722 |
| HRGMv2_2107_1_1343 | vegetarian > omnivore | 1.39380 | 0.02445 |
| HRGMv2_2107_1_1347 | vegan > omnivore | 1.45431 | 0.01722 |