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Cluster: HRGMv2_2107_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2107_1 HRGMv2_2107_1_1265 1467867 1469012 - GH3
pfam HRGMv2_2107_1 HRGMv2_2107_1_1266 1469005 1469742 - PseudoU_synth_1 | PseudoU_synth_1
TC HRGMv2_2107_1 HRGMv2_2107_1_1267 1469758 1470558 - 3.A.1.25.4
TC HRGMv2_2107_1 HRGMv2_2107_1_1268 1470667 1472664 - 3.A.1.25.6
Gene ID: HRGMv2_2107_1_1265
Type: CAZyme
Location: 1467867 - 1469012 (-)
Gene ID: HRGMv2_2107_1_1266
Type: pfam
Location: 1469005 - 1469742 (-)
Gene ID: HRGMv2_2107_1_1267
Type: TC
Location: 1469758 - 1470558 (-)
Gene ID: HRGMv2_2107_1_1268
Type: TC
Location: 1470667 - 1472664 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2107_1_1268 vegan > omnivore 1.07004 0.01722

🧭 Explore Read Mapping of CGC

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