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Cluster: HRGMv2_2107_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2107_1 HRGMv2_2107_1_1104 1276816 1277598 - 2.A.5.5.2
TC HRGMv2_2107_1 HRGMv2_2107_1_1105 1277890 1279287 - 2.A.22.5.3
TC HRGMv2_2107_1 HRGMv2_2107_1_1106 1279478 1280866 - 2.A.66.1.34
CAZyme HRGMv2_2107_1 HRGMv2_2107_1_1107 1281145 1282842 + CE4
pfam HRGMv2_2107_1 HRGMv2_2107_1_1108 1283205 1284077 - SAICAR_synt
pfam HRGMv2_2107_1 HRGMv2_2107_1_1109 1284183 1285100 - SUFBD_core
TC HRGMv2_2107_1 HRGMv2_2107_1_1110 1285119 1285844 - 3.A.1.25.6
Gene ID: HRGMv2_2107_1_1104
Type: TC
Location: 1276816 - 1277598 (-)
Gene ID: HRGMv2_2107_1_1105
Type: TC
Location: 1277890 - 1279287 (-)
Gene ID: HRGMv2_2107_1_1106
Type: TC
Location: 1279478 - 1280866 (-)
Gene ID: HRGMv2_2107_1_1107
Type: CAZyme
Location: 1281145 - 1282842 (+)
Gene ID: HRGMv2_2107_1_1108
Type: pfam
Location: 1283205 - 1284077 (-)
Gene ID: HRGMv2_2107_1_1109
Type: pfam
Location: 1284183 - 1285100 (-)
Gene ID: HRGMv2_2107_1_1110
Type: TC
Location: 1285119 - 1285844 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2107_1_1106 vegan > omnivore 1.14059 0.01722
HRGMv2_2107_1_1106 vegetarian > omnivore 1.20519 0.02445

🧭 Explore Read Mapping of CGC

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