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Cluster: HRGMv2_2107_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2107_1 HRGMv2_2107_1_982 1137968 1140961 + GT51
pfam HRGMv2_2107_1 HRGMv2_2107_1_983 1141052 1141408 - SpoVAC_SpoVAEB
TC HRGMv2_2107_1 HRGMv2_2107_1_984 1141417 1142436 - 9.A.11.1.1
TC HRGMv2_2107_1 HRGMv2_2107_1_985 1142584 1143891 + 2.A.49.9.2
pfam HRGMv2_2107_1 HRGMv2_2107_1_986 1143980 1145689 - VanW | G5
TC HRGMv2_2107_1 HRGMv2_2107_1_987 1145893 1146351 - 9.A.11.1.1
TC HRGMv2_2107_1 HRGMv2_2107_1_988 1146431 1146853 - 9.A.11.1.1
TC HRGMv2_2107_1 HRGMv2_2107_1_989 1146843 1147472 - 9.A.11.1.1
Gene ID: HRGMv2_2107_1_982
Type: CAZyme
Location: 1137968 - 1140961 (+)
Gene ID: HRGMv2_2107_1_983
Type: pfam
Location: 1141052 - 1141408 (-)
Gene ID: HRGMv2_2107_1_984
Type: TC
Location: 1141417 - 1142436 (-)
Gene ID: HRGMv2_2107_1_985
Type: TC
Location: 1142584 - 1143891 (+)
Gene ID: HRGMv2_2107_1_986
Type: pfam
Location: 1143980 - 1145689 (-)
Gene ID: HRGMv2_2107_1_987
Type: TC
Location: 1145893 - 1146351 (-)
Gene ID: HRGMv2_2107_1_988
Type: TC
Location: 1146431 - 1146853 (-)
Gene ID: HRGMv2_2107_1_989
Type: TC
Location: 1146843 - 1147472 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2107_1_986 vegetarian > omnivore 1.00808 0.02445
HRGMv2_2107_1_989 vegan > omnivore 1.14856 0.01722

🧭 Explore Read Mapping of CGC

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