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Cluster: HRGMv2_2107_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2107_1 HRGMv2_2107_1_887 1022825 1023925 - 3.A.11.1.3
peptidase HRGMv2_2107_1 HRGMv2_2107_1_888 1023915 1025498 - S16.UNW
pfam HRGMv2_2107_1 HRGMv2_2107_1_889 1025650 1026612 - cobW | DUF1980_C
TC HRGMv2_2107_1 HRGMv2_2107_1_890 1026622 1027728 - 9.B.10.1.1
TC HRGMv2_2107_1 HRGMv2_2107_1_891 1027822 1028757 - 1.A.23.2.2
CAZyme HRGMv2_2107_1 HRGMv2_2107_1_892 1028762 1030675 - GH13_9
Gene ID: HRGMv2_2107_1_887
Type: TC
Location: 1022825 - 1023925 (-)
Gene ID: HRGMv2_2107_1_888
Type: peptidase
Location: 1023915 - 1025498 (-)
Gene ID: HRGMv2_2107_1_889
Type: pfam
Location: 1025650 - 1026612 (-)
Gene ID: HRGMv2_2107_1_890
Type: TC
Location: 1026622 - 1027728 (-)
Gene ID: HRGMv2_2107_1_891
Type: TC
Location: 1027822 - 1028757 (-)
Gene ID: HRGMv2_2107_1_892
Type: CAZyme
Location: 1028762 - 1030675 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2107_1_891 vegan > omnivore 1.11437 0.01722
HRGMv2_2107_1_891 vegetarian > omnivore 1.16641 0.02445
HRGMv2_2107_1_892 vegan > omnivore 1.43620 0.01722

🧭 Explore Read Mapping of CGC

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