Cluster: HRGMv2_2107_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2107
- CGC Family ID: CGCFAM_01344
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_660 | 759151 | 761916 | - | 3.A.12.1.1 |
| pfam | HRGMv2_2107_1 | HRGMv2_2107_1_661 | 761930 | 762817 | - | BacA |
| peptidase | HRGMv2_2107_1 | HRGMv2_2107_1_662 | 762942 | 763601 | - | S14.UPW |
| CAZyme | HRGMv2_2107_1 | HRGMv2_2107_1_663 | 763770 | 766166 | - | GH94 |
Gene ID: HRGMv2_2107_1_660
Type: TC
Location: 759151 - 761916 (-)
Type: TC
Location: 759151 - 761916 (-)
Gene ID: HRGMv2_2107_1_661
Type: pfam
Location: 761930 - 762817 (-)
Type: pfam
Location: 761930 - 762817 (-)
Gene ID: HRGMv2_2107_1_662
Type: peptidase
Location: 762942 - 763601 (-)
Type: peptidase
Location: 762942 - 763601 (-)
Gene ID: HRGMv2_2107_1_663
Type: CAZyme
Location: 763770 - 766166 (-)
Type: CAZyme
Location: 763770 - 766166 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus ammoniilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2107_1_662 | vegan > omnivore | 1.26258 | 0.01722 |
| HRGMv2_2107_1_662 | vegetarian > omnivore | 1.01275 | 0.02445 |