Cluster: HRGMv2_2107_CGC3
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2107
- CGC Family ID: CGCFAM_00050
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_218 | 284060 | 285553 | + | 9.B.18.1.3 |
| CAZyme | HRGMv2_2107_1 | HRGMv2_2107_1_219 | 285554 | 286297 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_2107_1 | HRGMv2_2107_1_220 | 286321 | 286512 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2107_1 | HRGMv2_2107_1_221 | 286539 | 287285 | + | GT2 |
| pfam | HRGMv2_2107_1 | HRGMv2_2107_1_222 | 287307 | 288533 | + | UDPGP |
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_223 | 288760 | 290226 | + | 9.B.18.1.2 |
| CAZyme | HRGMv2_2107_1 | HRGMv2_2107_1_224 | 290280 | 291398 | + | GT4 |
| CAZyme | HRGMv2_2107_1 | HRGMv2_2107_1_225 | 291404 | 292603 | + | GT4 |
| pfam | HRGMv2_2107_1 | HRGMv2_2107_1_226 | 292627 | 293814 | + | Radical_SAM | SPASM |
| NULL(UNKNOWN) | HRGMv2_2107_1 | HRGMv2_2107_1_227 | 293814 | 294416 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2107_1 | HRGMv2_2107_1_228 | 294477 | 295124 | + | GT4 |
Gene ID: HRGMv2_2107_1_218
Type: TC
Location: 284060 - 285553 (+)
Type: TC
Location: 284060 - 285553 (+)
Gene ID: HRGMv2_2107_1_219
Type: CAZyme
Location: 285554 - 286297 (+)
Type: CAZyme
Location: 285554 - 286297 (+)
Gene ID: HRGMv2_2107_1_220
Type:
Location: 286321 - 286512 (+)
Type:
Location: 286321 - 286512 (+)
Gene ID: HRGMv2_2107_1_221
Type: CAZyme
Location: 286539 - 287285 (+)
Type: CAZyme
Location: 286539 - 287285 (+)
Gene ID: HRGMv2_2107_1_222
Type: pfam
Location: 287307 - 288533 (+)
Type: pfam
Location: 287307 - 288533 (+)
Gene ID: HRGMv2_2107_1_223
Type: TC
Location: 288760 - 290226 (+)
Type: TC
Location: 288760 - 290226 (+)
Gene ID: HRGMv2_2107_1_224
Type: CAZyme
Location: 290280 - 291398 (+)
Type: CAZyme
Location: 290280 - 291398 (+)
Gene ID: HRGMv2_2107_1_225
Type: CAZyme
Location: 291404 - 292603 (+)
Type: CAZyme
Location: 291404 - 292603 (+)
Gene ID: HRGMv2_2107_1_226
Type: pfam
Location: 292627 - 293814 (+)
Type: pfam
Location: 292627 - 293814 (+)
Gene ID: HRGMv2_2107_1_227
Type:
Location: 293814 - 294416 (+)
Type:
Location: 293814 - 294416 (+)
Gene ID: HRGMv2_2107_1_228
Type: CAZyme
Location: 294477 - 295124 (+)
Type: CAZyme
Location: 294477 - 295124 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus ammoniilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2107_1_219 | vegan > omnivore | 1.44478 | 0.01722 |
| HRGMv2_2107_1_219 | vegetarian > omnivore | 1.35575 | 0.02445 |
| HRGMv2_2107_1_220 | vegan > omnivore | 1.50432 | 0.01722 |
| HRGMv2_2107_1_220 | vegetarian > omnivore | 1.43979 | 0.02445 |
| HRGMv2_2107_1_221 | vegetarian > omnivore | 1.03259 | 0.02445 |
| HRGMv2_2107_1_222 | vegan > omnivore | 1.22986 | 0.01722 |
| HRGMv2_2107_1_222 | vegetarian > omnivore | 1.49032 | 0.02445 |
| HRGMv2_2107_1_227 | vegan > omnivore | 1.31401 | 0.01722 |
| HRGMv2_2107_1_228 | vegan > omnivore | 1.92470 | 0.01722 |
| HRGMv2_2107_1_228 | vegetarian > omnivore | 1.14646 | 0.02445 |