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Cluster: HRGMv2_2107_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2107_1 HRGMv2_2107_1_2074 2380256 2381248 + 9.B.157.1.1
TC HRGMv2_2107_1 HRGMv2_2107_1_2075 2381264 2383513 + 3.A.7.16.1
TC HRGMv2_2107_1 HRGMv2_2107_1_2076 2383595 2384317 + 3.A.11.1.4
pfam HRGMv2_2107_1 HRGMv2_2107_1_2077 2384520 2385296 + His_biosynth
CAZyme HRGMv2_2107_1 HRGMv2_2107_1_2078 2385420 2387720 + CBM4 | GH9
pfam HRGMv2_2107_1 HRGMv2_2107_1_2079 2387798 2390989 + GtrA_DPMS_TM | YfhO
TC HRGMv2_2107_1 HRGMv2_2107_1_2080 2391291 2393042 + 2.A.21.9.2
Gene ID: HRGMv2_2107_1_2074
Type: TC
Location: 2380256 - 2381248 (+)
Gene ID: HRGMv2_2107_1_2075
Type: TC
Location: 2381264 - 2383513 (+)
Gene ID: HRGMv2_2107_1_2076
Type: TC
Location: 2383595 - 2384317 (+)
Gene ID: HRGMv2_2107_1_2077
Type: pfam
Location: 2384520 - 2385296 (+)
Gene ID: HRGMv2_2107_1_2078
Type: CAZyme
Location: 2385420 - 2387720 (+)
Gene ID: HRGMv2_2107_1_2079
Type: pfam
Location: 2387798 - 2390989 (+)
Gene ID: HRGMv2_2107_1_2080
Type: TC
Location: 2391291 - 2393042 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2107_1_2076 vegetarian > omnivore 1.33283 0.02445

🧭 Explore Read Mapping of CGC

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