Cluster: HRGMv2_2107_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2107
- CGC Family ID: CGCFAM_05739
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_1974 | 2267317 | 2269560 | + | 2.A.6.4.2 |
| pfam | HRGMv2_2107_1 | HRGMv2_2107_1_1975 | 2269732 | 2270400 | + | Hydrolase | Hydrolase_like | HAD_2 |
| TF | HRGMv2_2107_1 | HRGMv2_2107_1_1976 | 2270393 | 2271262 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2107_1 | HRGMv2_2107_1_1977 | 2271482 | 2274520 | + | GH2 |
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_1978 | 2274537 | 2275910 | + | 2.A.2.3.3 |
Gene ID: HRGMv2_2107_1_1974
Type: TC
Location: 2267317 - 2269560 (+)
Type: TC
Location: 2267317 - 2269560 (+)
Gene ID: HRGMv2_2107_1_1975
Type: pfam
Location: 2269732 - 2270400 (+)
Type: pfam
Location: 2269732 - 2270400 (+)
Gene ID: HRGMv2_2107_1_1976
Type: TF
Location: 2270393 - 2271262 (-)
Type: TF
Location: 2270393 - 2271262 (-)
Gene ID: HRGMv2_2107_1_1977
Type: CAZyme
Location: 2271482 - 2274520 (+)
Type: CAZyme
Location: 2271482 - 2274520 (+)
Gene ID: HRGMv2_2107_1_1978
Type: TC
Location: 2274537 - 2275910 (+)
Type: TC
Location: 2274537 - 2275910 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus ammoniilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2107_1_1974 | vegan > omnivore | 1.11217 | 0.01722 |
| HRGMv2_2107_1_1975 | vegetarian > omnivore | 1.38936 | 0.02445 |