Cluster: HRGMv2_2107_CGC14
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2107
- CGC Family ID: CGCFAM_09960
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_1895 | 2160292 | 2162046 | + | 1.A.33.1.4 |
| NULL(UNKNOWN) | HRGMv2_2107_1 | HRGMv2_2107_1_1896 | 2162152 | 2162547 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_1897 | 2162562 | 2163473 | + | 1.E.12.1.3 |
| STP | HRGMv2_2107_1 | HRGMv2_2107_1_1898 | 2163474 | 2164274 | + | TPR_2 |
| CAZyme | HRGMv2_2107_1 | HRGMv2_2107_1_1899 | 2164630 | 2167074 | + | GT35 |
| pfam | HRGMv2_2107_1 | HRGMv2_2107_1_1900 | 2167547 | 2169910 | - | NosD | NosD | Beta_helix | Beta_helix | Beta_helix |
| pfam | HRGMv2_2107_1 | HRGMv2_2107_1_1901 | 2169992 | 2172664 | - | fn3 | NosD | NosD | Beta_helix |
| CAZyme | HRGMv2_2107_1 | HRGMv2_2107_1_1902 | 2172693 | 2173643 | - | GT2 |
| pfam | HRGMv2_2107_1 | HRGMv2_2107_1_1903 | 2173834 | 2175078 | + | Acyl_transf_3 |
| CAZyme | HRGMv2_2107_1 | HRGMv2_2107_1_1904 | 2175158 | 2177641 | - | GH94 |
Gene ID: HRGMv2_2107_1_1895
Type: TC
Location: 2160292 - 2162046 (+)
Type: TC
Location: 2160292 - 2162046 (+)
Gene ID: HRGMv2_2107_1_1896
Type:
Location: 2162152 - 2162547 (+)
Type:
Location: 2162152 - 2162547 (+)
Gene ID: HRGMv2_2107_1_1897
Type: TC
Location: 2162562 - 2163473 (+)
Type: TC
Location: 2162562 - 2163473 (+)
Gene ID: HRGMv2_2107_1_1898
Type: STP
Location: 2163474 - 2164274 (+)
Type: STP
Location: 2163474 - 2164274 (+)
Gene ID: HRGMv2_2107_1_1899
Type: CAZyme
Location: 2164630 - 2167074 (+)
Type: CAZyme
Location: 2164630 - 2167074 (+)
Gene ID: HRGMv2_2107_1_1900
Type: pfam
Location: 2167547 - 2169910 (-)
Type: pfam
Location: 2167547 - 2169910 (-)
Gene ID: HRGMv2_2107_1_1901
Type: pfam
Location: 2169992 - 2172664 (-)
Type: pfam
Location: 2169992 - 2172664 (-)
Gene ID: HRGMv2_2107_1_1902
Type: CAZyme
Location: 2172693 - 2173643 (-)
Type: CAZyme
Location: 2172693 - 2173643 (-)
Gene ID: HRGMv2_2107_1_1903
Type: pfam
Location: 2173834 - 2175078 (+)
Type: pfam
Location: 2173834 - 2175078 (+)
Gene ID: HRGMv2_2107_1_1904
Type: CAZyme
Location: 2175158 - 2177641 (-)
Type: CAZyme
Location: 2175158 - 2177641 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus ammoniilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2107_1_1896 | vegan > omnivore | 1.09444 | 0.01722 |
| HRGMv2_2107_1_1898 | vegan > omnivore | 1.13871 | 0.01722 |
| HRGMv2_2107_1_1903 | vegan > omnivore | 1.01067 | 0.01722 |