Cluster: HRGMv2_2107_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2107
- CGC Family ID: CGCFAM_06096
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2107_1 | HRGMv2_2107_1_1872 | 2132308 | 2135754 | + | CBM4 | CBM4 | CBM4 | GH16_3 |
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_1873 | 2135853 | 2136737 | - | 2.A.115.1.1 |
| peptidase | HRGMv2_2107_1 | HRGMv2_2107_1_1874 | 2136931 | 2137965 | + | S09.UPW |
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_1875 | 2138045 | 2138878 | + | 3.A.1.132.3 |
Gene ID: HRGMv2_2107_1_1872
Type: CAZyme
Location: 2132308 - 2135754 (+)
Type: CAZyme
Location: 2132308 - 2135754 (+)
Gene ID: HRGMv2_2107_1_1873
Type: TC
Location: 2135853 - 2136737 (-)
Type: TC
Location: 2135853 - 2136737 (-)
Gene ID: HRGMv2_2107_1_1874
Type: peptidase
Location: 2136931 - 2137965 (+)
Type: peptidase
Location: 2136931 - 2137965 (+)
Gene ID: HRGMv2_2107_1_1875
Type: TC
Location: 2138045 - 2138878 (+)
Type: TC
Location: 2138045 - 2138878 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus ammoniilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.