Cluster: HRGMv2_2107_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2107
- CGC Family ID: CGCFAM_04037
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_1762 | 2015253 | 2016833 | - | 9.A.11.1.2 |
| CAZyme | HRGMv2_2107_1 | HRGMv2_2107_1_1763 | 2017198 | 2018259 | + | GH109 |
| NULL(UNKNOWN) | HRGMv2_2107_1 | HRGMv2_2107_1_1764 | 2018370 | 2020556 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_1765 | 2020617 | 2021339 | - | 3.A.1.148.3 |
Gene ID: HRGMv2_2107_1_1762
Type: TC
Location: 2015253 - 2016833 (-)
Type: TC
Location: 2015253 - 2016833 (-)
Gene ID: HRGMv2_2107_1_1763
Type: CAZyme
Location: 2017198 - 2018259 (+)
Type: CAZyme
Location: 2017198 - 2018259 (+)
Gene ID: HRGMv2_2107_1_1764
Type:
Location: 2018370 - 2020556 (-)
Type:
Location: 2018370 - 2020556 (-)
Gene ID: HRGMv2_2107_1_1765
Type: TC
Location: 2020617 - 2021339 (-)
Type: TC
Location: 2020617 - 2021339 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus ammoniilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2107_1_1763 | vegetarian > omnivore | 1.12908 | 0.02445 |
| HRGMv2_2107_1_1764 | vegan > omnivore | 1.09450 | 0.01722 |
| HRGMv2_2107_1_1764 | vegetarian > omnivore | 1.32792 | 0.02445 |