Cluster: HRGMv2_2107_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2107
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2107_1 | HRGMv2_2107_1_1359 | 1556447 | 1558084 | - | GH13_18 |
| pfam | HRGMv2_2107_1 | HRGMv2_2107_1_1360 | 1558109 | 1558936 | - | Zeta_toxin |
| CAZyme | HRGMv2_2107_1 | HRGMv2_2107_1_1361 | 1559041 | 1561218 | - | GH36 |
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_1362 | 1561234 | 1562118 | - | 3.A.1.1.28 |
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_1363 | 1562115 | 1563023 | - | 3.A.1.1.28 |
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_1364 | 1563026 | 1564309 | - | 3.A.1.1.28 |
Gene ID: HRGMv2_2107_1_1359
Type: CAZyme
Location: 1556447 - 1558084 (-)
Type: CAZyme
Location: 1556447 - 1558084 (-)
Gene ID: HRGMv2_2107_1_1360
Type: pfam
Location: 1558109 - 1558936 (-)
Type: pfam
Location: 1558109 - 1558936 (-)
Gene ID: HRGMv2_2107_1_1361
Type: CAZyme
Location: 1559041 - 1561218 (-)
Type: CAZyme
Location: 1559041 - 1561218 (-)
Gene ID: HRGMv2_2107_1_1362
Type: TC
Location: 1561234 - 1562118 (-)
Type: TC
Location: 1561234 - 1562118 (-)
Gene ID: HRGMv2_2107_1_1363
Type: TC
Location: 1562115 - 1563023 (-)
Type: TC
Location: 1562115 - 1563023 (-)
Gene ID: HRGMv2_2107_1_1364
Type: TC
Location: 1563026 - 1564309 (-)
Type: TC
Location: 1563026 - 1564309 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus ammoniilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.