Cluster: HRGMv2_2107_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2107
- CGC Family ID: CGCFAM_09340
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2107_1 | HRGMv2_2107_1_98 | 116786 | 117808 | + | GH53 |
| TF | HRGMv2_2107_1 | HRGMv2_2107_1_99 | 117959 | 118726 | - | 0042546 |
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_100 | 118964 | 120256 | - | 9.A.40.2.4 |
| NULL(UNKNOWN) | HRGMv2_2107_1 | HRGMv2_2107_1_101 | 120526 | 120714 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2107_1 | HRGMv2_2107_1_102 | 120881 | 122512 | + | 3.A.1.121.4 |
Gene ID: HRGMv2_2107_1_98
Type: CAZyme
Location: 116786 - 117808 (+)
Type: CAZyme
Location: 116786 - 117808 (+)
Gene ID: HRGMv2_2107_1_99
Type: TF
Location: 117959 - 118726 (-)
Type: TF
Location: 117959 - 118726 (-)
Gene ID: HRGMv2_2107_1_100
Type: TC
Location: 118964 - 120256 (-)
Type: TC
Location: 118964 - 120256 (-)
Gene ID: HRGMv2_2107_1_101
Type:
Location: 120526 - 120714 (+)
Type:
Location: 120526 - 120714 (+)
Gene ID: HRGMv2_2107_1_102
Type: TC
Location: 120881 - 122512 (+)
Type: TC
Location: 120881 - 122512 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus ammoniilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2107_1_100 | vegan > omnivore | 1.94094 | 0.01722 |
| HRGMv2_2107_1_101 | vegan > omnivore | 2.23707 | 0.01722 |
| HRGMv2_2107_1_101 | vegetarian > omnivore | 1.74522 | 0.02445 |