Cluster: HRGMv2_2106_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2106
- CGC Family ID: CGCFAM_09959
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2106_9 | HRGMv2_2106_9_53 | 37121 | 38098 | - | 3.A.1.2.21 |
| TC | HRGMv2_2106_9 | HRGMv2_2106_9_54 | 38132 | 40114 | - | 1.B.52.2.2 |
| pfam | HRGMv2_2106_9 | HRGMv2_2106_9_55 | 40721 | 41572 | - | Patatin | DUF6363 |
| NULL(UNKNOWN) | HRGMv2_2106_9 | HRGMv2_2106_9_56 | 42074 | 43765 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2106_9 | HRGMv2_2106_9_57 | 43876 | 45012 | + | GH105 |
Gene ID: HRGMv2_2106_9_53
Type: TC
Location: 37121 - 38098 (-)
Type: TC
Location: 37121 - 38098 (-)
Gene ID: HRGMv2_2106_9_54
Type: TC
Location: 38132 - 40114 (-)
Type: TC
Location: 38132 - 40114 (-)
Gene ID: HRGMv2_2106_9_55
Type: pfam
Location: 40721 - 41572 (-)
Type: pfam
Location: 40721 - 41572 (-)
Gene ID: HRGMv2_2106_9_56
Type:
Location: 42074 - 43765 (+)
Type:
Location: 42074 - 43765 (+)
Gene ID: HRGMv2_2106_9_57
Type: CAZyme
Location: 43876 - 45012 (+)
Type: CAZyme
Location: 43876 - 45012 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900545725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2106_9_53 | vegetarian > vegan | 2.34777 | 0.00180 |
| HRGMv2_2106_9_54 | vegetarian > vegan | 2.03331 | 0.00180 |