Cluster: HRGMv2_2106_CGC7
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2106
- CGC Family ID: CGCFAM_00905
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2106_8 | HRGMv2_2106_8_25 | 28561 | 29010 | + | 9.A.11.1.1 |
| TC | HRGMv2_2106_8 | HRGMv2_2106_8_26 | 29205 | 30209 | + | 9.A.11.1.1 |
| pfam | HRGMv2_2106_8 | HRGMv2_2106_8_27 | 30340 | 30699 | + | SpoVAC_SpoVAEB |
| CAZyme | HRGMv2_2106_8 | HRGMv2_2106_8_28 | 30855 | 33677 | - | GT51 |
| pfam | HRGMv2_2106_8 | HRGMv2_2106_8_29 | 33882 | 34523 | + | UPF0029 | DUF1949 |
| STP | HRGMv2_2106_8 | HRGMv2_2106_8_30 | 34911 | 36488 | + | SBP_bac_1 |
| TC | HRGMv2_2106_8 | HRGMv2_2106_8_31 | 36660 | 38117 | + | 3.A.1.1.29 |
| TC | HRGMv2_2106_8 | HRGMv2_2106_8_32 | 38133 | 39002 | + | 3.A.1.1.29 |
| NULL(UNKNOWN) | HRGMv2_2106_8 | HRGMv2_2106_8_33 | 39169 | 39285 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2106_8 | HRGMv2_2106_8_34 | 39338 | 41290 | + | CBM91 | GH43_12 |
| NULL(UNKNOWN) | HRGMv2_2106_8 | HRGMv2_2106_8_35 | 41387 | 42460 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2106_8 | HRGMv2_2106_8_36 | 42451 | 44007 | + | GH28 |
| TC | HRGMv2_2106_8 | HRGMv2_2106_8_37 | 44169 | 45962 | + | 3.A.1.106.2 |
Gene ID: HRGMv2_2106_8_25
Type: TC
Location: 28561 - 29010 (+)
Type: TC
Location: 28561 - 29010 (+)
Gene ID: HRGMv2_2106_8_26
Type: TC
Location: 29205 - 30209 (+)
Type: TC
Location: 29205 - 30209 (+)
Gene ID: HRGMv2_2106_8_27
Type: pfam
Location: 30340 - 30699 (+)
Type: pfam
Location: 30340 - 30699 (+)
Gene ID: HRGMv2_2106_8_28
Type: CAZyme
Location: 30855 - 33677 (-)
Type: CAZyme
Location: 30855 - 33677 (-)
Gene ID: HRGMv2_2106_8_29
Type: pfam
Location: 33882 - 34523 (+)
Type: pfam
Location: 33882 - 34523 (+)
Gene ID: HRGMv2_2106_8_30
Type: STP
Location: 34911 - 36488 (+)
Type: STP
Location: 34911 - 36488 (+)
Gene ID: HRGMv2_2106_8_31
Type: TC
Location: 36660 - 38117 (+)
Type: TC
Location: 36660 - 38117 (+)
Gene ID: HRGMv2_2106_8_32
Type: TC
Location: 38133 - 39002 (+)
Type: TC
Location: 38133 - 39002 (+)
Gene ID: HRGMv2_2106_8_33
Type:
Location: 39169 - 39285 (+)
Type:
Location: 39169 - 39285 (+)
Gene ID: HRGMv2_2106_8_34
Type: CAZyme
Location: 39338 - 41290 (+)
Type: CAZyme
Location: 39338 - 41290 (+)
Gene ID: HRGMv2_2106_8_35
Type:
Location: 41387 - 42460 (+)
Type:
Location: 41387 - 42460 (+)
Gene ID: HRGMv2_2106_8_36
Type: CAZyme
Location: 42451 - 44007 (+)
Type: CAZyme
Location: 42451 - 44007 (+)
Gene ID: HRGMv2_2106_8_37
Type: TC
Location: 44169 - 45962 (+)
Type: TC
Location: 44169 - 45962 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900545725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.